Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs56295021 chr3:129245352 T/C 4.84E-5 293 21.47 20.63 14.73 KM Plot
CESC rs56327213 chr14:90727007 C/T 3.64E-5 292 20.98 23.07 23.03 KM Plot
CESC rs56374641 chr16:67908713 G/T 4.95E-7 294 20.92 28.47 17.43 KM Plot
CESC rs56386764 chr2:240094005 T/C 6.43E-5 286 21.4 21.1 6.88 KM Plot
CESC rs56408669 chr7:123138334 C/T 4.7E-13 295 23.42 18.33 3.97 KM Plot
CESC rs56845922 chr16:67770828 T/C 2.7E-6 287 21.07 26.37 16.87 KM Plot
CESC rs569766 chr11:125532369 G/A 1.03E-5 291 11.6 26.5 21.1 KM Plot
CESC rs57123966 chr17:29078575 TA/T 0 289 21.23 21.08 2.47 KM Plot
CESC rs57166198 chr1:59090251 T/C 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs57708324 chr10:7666300 G/A 1.72E-5 286 23.3 19.83 15.33 KM Plot
CESC rs57845910 chr3:129206215 TGCTG/T 4.62E-5 296 21.2 20.63 14.73 KM Plot
CESC rs57887870 chr4:110990262 G/A 2.49E-5 295 21.27 25.45 1.15 KM Plot
CESC rs5789282 chr11:3006027 ACAG/A 4.99E-5 294 21.68 21.1 21.73 KM Plot
CESC rs579661 chr11:125474766 A/G 2.72E-6 293 3.47 26.37 21.2 KM Plot
CESC rs57994244 chr16:67726214 G/GTGGCTCA 5.63E-6 285 21.07 26.27 16.87 KM Plot